Foucault Pierre, Halary Sébastien, Duval Charlotte, Goto Midoli, Marie Benjamin, Hamlaoui Sahima, Jardillier Ludwig, Lamy Dominique, Lance Emilie, Raimbault Emmanuelle, Allouti Fayçal, Troussellier Marc, Bernard Cécile, Leloup Julie & Duperron Sébastien, février 2025 — A summer in the greater Paris: trophic status of peri-urban lakes shapes prokaryotic community structure and functional potential. With more than 12 million inhabitants, the Greater Paris offers a “natural laboratory” to explore the effects of eutrophication… Environmental Microbiome vol. 20, n° 1, p. 24
ISSN
2524-6372
https://dx.doi.org/10.1186/s40793-025-00681-x
Roussel Théotime, Hubas Cédric, Halary Sébastien, Chynel Mathias, Duval Charlotte, Cadoret Jean-Paul, Meziane Tarik, Vernès Léa, Yéprémian Claude, Bernard Cécile & Marie Benjamin, janvier 2025 — Limnospira (Cyanobacteria) chemical fingerprint reveals local molecular adaptation. Microbiology Spectrum , , e01901–24 Publisher: American Society for Microbiology
https://dx.doi.org/10.1128/spectrum.01901-24
Klaubert Tim J., Gellner Jonas, Bernard Charles, Effert Juliana, Lombard Carine, Kaila Ville R. I., Bode Helge B., Li Yanyan & Groll Michael, 2025 — Molecular basis for azetidine-2-carboxylic acid biosynthesis. Nature Communications vol. 16, n° 1, p. 1348
ISSN
2041-1723
https://dx.doi.org/10.1038/s41467-025-56610-6
Boudrioua Abdelhakim, Baëtz Benjamin, Desmadril Solenn, Goulard Christophe, Groo Anne-Claire, Lombard Carine, Gueulle Sabrina, Marugan Marie, Malzert-Fréon Aurélie, Hartke Axel, Li Yanyan & Giraud Caroline, 2025 — Lasso peptides sviceucin and siamycin I have anti-virulence activity and restore vancomycin effectiveness in vancomycin-resistant pathogens. iScience , , p. 111922
ISSN
2589-0042
https://dx.doi.org/10.1016/j.isci.2025.111922
Bourmancé Lucas, Marie Arul, Puppo Rémy, Brûlé Sébastien, Schaeffer Philippe, Toupet Maud, Nitsche Ruben, Elsaesser Andreas & Kish Adrienne, 2025 — The salty tango of brine composition and UV photochemistry effects on Halobacterium salinarum cell envelope biosignature preservation. Communications Biology vol. 8, n° 1, p. 1-14
ISSN
2399-3642
https://dx.doi.org/10.1038/s42003-025-08007-w
Touceda Inés Seijo, Demay Justine, Duval Charlotte, Yéprémian Claude, Reinhardt Anita & Marie Benjamin, décembre 2024 — Light and temperature culture conditions impact the metabolome of the cyanobacterium of therapeutic interest Planktothricoides raciborskii PMC 877.14. Cyanobacteria are ancient photosynthetic microorganisms with a long evolutionary history that have adapted to inhabit diverse… Algal Research vol. 84, , p. 103738
ISSN
2211-9264
https://dx.doi.org/10.1016/j.algal.2024.103738
Colas Simon, Marie Benjamin, Morin Soizic, Milhe-Poutingon Mathieu, Foucault Pierre, Chalvin Siann, Gelber Clémentine, Baldoni-Andrey Patrick, Gurieff Nicholas, Fortin Claude & Le Faucheur Séverine, juin 2024 — New sensitive tools to characterize meta-metabolome response to short- and long-term cobalt exposure in dynamic river biofilm communities. Untargeted metabolomics is a non-a priori analysis of biomolecules that characterizes the metabolome variations induced by… Science of The Total Environment vol. 927, , p. 171851
ISSN
0048-9697
https://dx.doi.org/10.1016/j.scitotenv.2024.171851
Colas Simon, Marie Benjamin, Milhe-Poutingon Mathieu, Lot Marie-Claire, Boullemant Amiel, Fortin Claude & Le Faucheur Séverine, mai 2024 — Meta-metabolomic responses of river biofilms to cobalt exposure and use of dose-response model trends as an indicator of effects. The response of the meta-metabolome is rarely used to characterize the effects of contaminants on a whole community. Here, the… Journal of Hazardous Materials vol. 470, , p. 134099
ISSN
1873-3336
https://dx.doi.org/10.1016/j.jhazmat.2024.134099
Castaldi Andrea, Truong Bich Ngan, Vu Quyen Thi, Le Thi Hong Minh, Marie Arul, Le Pennec Gaël, Rouvier Florent, Brunel Jean-Michel, Longeon Arlette, Pham Van Cuong, Doan Thi Mai Huong & Bourguet-Kondracki Marie-Lise, 2024 — Computational Methods Reveal a Series of Cyclic and Linear Lichenysins and Surfactins from the Vietnamese Marine Sediment-Derived Streptomyces Strain G222. Molecules vol. 29, n° 7, p. 1458
ISSN
1420-3049
https://dx.doi.org/10.3390/molecules29071458
Sue Kenneth, Cadelis Melissa M., Rouvier Florent, Bourguet-Kondracki Marie-Lise, Brunel Jean Michel & Copp Brent R., 2024 — Antimicrobial Indole-3-Carboxamido-Polyamine Conjugates Target Bacterial Membranes and Are Antibiotic Potentiators. Biomolecules vol. 14, n° 3, p. 261
ISSN
2218-273X
https://dx.doi.org/10.3390/biom14030261
Schiefelbein Kevin, Lang Jakob, Schuster Matthias, Grigglestone Claire E., Striga Robin, Bigler Laurent, Schuman Meredith C., Zerbe Oliver, Li Yanyan & Hartrampf Nina, 2024 — Merging Flow Synthesis and Enzymatic Maturation to Expand the Chemical Space of Lasso Peptides. Journal of the American Chemical Society vol. 146, n° 25, p. 17261-17269
ISSN
0002-7863
https://dx.doi.org/10.1021/jacs.4c03898
Halary Sébastien, Duval Charlotte, Marie Benjamin, Bernard Cécile, Piquet Bérénice, Gros Olivier, Bourguet-Kondracki Marie-Lise & Duperron Sébastien, janvier 2024 — Genomes of nine biofilm-forming filamentous strains of Cyanobacteria (genera Jaaginema, Scytonema, and Karukerafilum gen. nov.) isolated from mangrove habitats of Guadeloupe (Lesser Antilles). Biofilm-forming cyanobacteria are abundant in mangrove ecosystems, colonizing various niches including sediment surface and… FEMS Microbes vol. 5, , xtad024
ISSN
2633-6685
https://dx.doi.org/10.1093/femsmc/xtad024
Leprevost Laura, Jünger Sophie, Lippens Guy, Guillaume Céline, Sicoli Giuseppe, Oliveira Lydie, Falcone Enrico, de Santis Emiliano, Rivera-Millot Alex, Billon Gabriel, Stellato Francesco, Henry Céline, Antoine Rudy, Zirah Séverine, Dubiley Svetlana et al., 2024 — A widespread family of ribosomal peptide metallophores involved in bacterial adaptation to metal stress. Proceedings of the National Academy of Sciences vol. 121, n° 49, e2408304121
https://dx.doi.org/10.1073/pnas.2408304121
Baquero Fernando, Beis Konstantinos, Craik David J., Li Yanyan, Link A. James, Rebuffat Sylvie, Salomón Raúl, Severinov Konstantin, Zirah Séverine & Hegemann Julian D., 2024 — The pearl jubilee of microcin J25: thirty years of research on an exceptional lasso peptide. Natural Product Reports vol. 121, , e2408304121
ISSN
1460-4752
https://dx.doi.org/10.1039/D3NP00046J
Effert Juliana, Westphalen Margaretha, Calderari Andrea, Shi Yi-Ming, Elamri Isam, Najah Soumaya, Grün Peter, Li Yanyan, Gruez Arnaud, Weissman Kira J. & Bode Helge B, 2024 — Pyrrolizwilline, a unique bacterial alkaloid assembled by a nonribosomal peptide synthetase and non-enzymatic dimerization. Angewandte Chemie International Edition vol. 63, , e202411258
ISSN
1521-3773
https://dx.doi.org/10.1002/anie.202411258
Duperron Sébastien, Foucault Pierre, Duval Charlotte, Goto Midoli, Gallet Alison, Colas Simon & Marie Benjamin, novembre 2023 — Multi-omics analyses from a single sample: prior metabolite extraction does not alter the 16S rRNA-based characterization of prokaryotic community in a diversity of sample types. Massive sequencing of the 16S rRNA gene has become a standard first step to describe and compare microbial communities from… FEMS Microbiology Letters , , fnad125
ISSN
0378-1097
https://dx.doi.org/10.1093/femsle/fnad125
Roussel Théotime, Halary Sébastien, Duval Charlotte, Piquet Bérénice, Cadoret Jean-Paul, Vernès Léa, Bernard Cécile & Marie Benjamin, août 2023 — Monospecific renaming within the cyanobacterial genus Limnospira (Spirulina) and consequences for food authorization. The cyanobacterial genus, Limnospira (anc. Arthrospira Stizenberger ex Gomont 1892), commonly called “Spirulina”, is widely… Journal of Applied Microbiology vol. 134, n° 8, lxad159
ISSN
1364-5072
https://dx.doi.org/10.1093/jambio/lxad159
Halary Sébastien, Duperron Sébastien, Kim Tiam Sandra, Duval Charlotte, Bernard Cécile & Marie Benjamin, juin 2023 — Intra-population genomic diversity of the bloom-forming cyanobacterium, Aphanizomenon gracile, at low spatial scale. Cyanobacteria are oxygenic photosynthetic bacteria that perform a substantial part of the global primary production. Some… ISME Communications vol. 3, n° 1, p. 1-4 Number: 1 Publisher: Nature Publishing Group
ISSN
2730-6151
https://dx.doi.org/10.1038/s43705-023-00263-3
Gallet Alison, Halary Sébastien, Duval Charlotte, Huet Hélène, Duperron Sébastien & Marie Benjamin, mai 2023 — Disruption of fish gut microbiota composition and holobiont’s metabolome during a simulated Microcystis aeruginosa (Cyanobacteria) bloom. Cyanobacterial blooms are one of the most common stressors encountered by metazoans living in freshwater lentic systems such as… Microbiome vol. 11, n° 1, p. 108
ISSN
2049-2618
https://dx.doi.org/10.1186/s40168-023-01558-2
Favreau Charly, Tribondeau Alicia, Marugan Marie, Guyot François, Alpha-Bazin Beatrice, Marie Arul, Puppo Remy, Dufour Thierry, Huguet Arnaud, Zirah Séverine & Kish Adrienne, 2023 — Molecular acclimation of Halobacterium salinarum to halite brine inclusions. Frontiers in Microbiology vol. 13, , p. 1075274
ISSN
1664-302X
https://dx.doi.org/10.3389/fmicb.2022.1075274