List of publications

Audemard Juliette, Creusot Nicolas, Leloup Julie, Duval Charlotte, Halary Sbastien, Mary Lou, Eon Melissa, et al. 2026. “Integrating Metagenome-Scale Metabolic Models and Metabolomics to Explore Candidate Biochemical Interactions in Cultivated Microcystis Phycospheres”. ISME Communications, August, ycag226. doi:10.1093/ismeco/ycag226.

Duperron Sébastien, Foucault Pierre, Vern Amaury Le, Goto Midoli, Duval Charlotte, Marie Benjamin, Hamlaoui Sahima, et al. 2026. “Higher Trophic Status Leads to More Diverse and Divergent Microeukaryote Communities Over Time in Urban Lakes From the Greater Paris (France)”. Environmental Microbiology Reports 18 (June): e70355. doi:10.1111/1758-2229.70355.

Roussel Théotime, Quiquand Manon, Duval Charlotte, Cadoret Jean-Paul, Yéprémian Claude, Le Vern Amaury, Marie Benjamin, and Bernard Cécile. 2026. “Efficient Selection of New Limnospira Platensis Strains (spirulina) for Biomass and High-Value Molecule Production”. Journal of Applied Phycology, May. doi:10.1007/s10811-026-03866-0.

Le Meur Maiwenn, Decaestecker Ellen, Chang Xuexiu, Marie Benjamin, and Duperron Sébastien. 2026. “From Bystander to Key Player: Unveiling the Gut Microbiota’s Role in Mediating Cyanobacterial Toxicity in Aquatic Animals”. FEMS Microbiology Ecology 102 (March): fiag017. doi:10.1093/femsec/fiag017.

Noirmain Fanny, Marie Benjamin, Legrand Benjamin, and Latour Delphine. 2026. “Drought Preceding Rain Events Drives Shifts in Phytoplankton Composition and Metabolome in Lake Aydat (France) Revealing Molecular Strategies”. FEMS Microbiology Ecology 102 (February): fiag015. doi:10.1093/femsec/fiag015.

Huré Aurore, Le Meur Maiwenn, Duval Charlotte, Bouly Jean-Pierre, Mary Lou, Quiquand Manon, Dawra Michella, Gugger Muriel, Halary Sébastien, and Marie Benjamin. 2026. “Metabolite Diversity of Microcystis Strains Shows Tight Correspondence to Genotype and May Contribute to Ecotype Specificities”. Communications Biology 9 (January). Nature Publishing Group: 305. doi:10.1038/s42003-026-09599-7.

Marie Benjamin, Le Meur Maiwenn, Duval Charlotte, Quiquand Manon, Lance Emilie, and Duperron Sébastien. 2025. “The Threat Is in the Details - Critical Gap in Ecotoxicological Assessment of Microcystis Blooms Revealed by Critical Distinctions of Genotype Effects Induced on Medaka Fish”. Environmental Pollution (Barking, Essex: 1987), November, 127344. doi:10.1016/j.envpol.2025.127344.

Foucault Pierre, Halary Sébastien, Duval Charlotte, Goto Midoli, Marie Benjamin, Hamlaoui Sahima, Jardillier Ludwig, et al. 2025. “A Summer in the Greater Paris: Trophic Status of Peri-Urban Lakes Shapes Prokaryotic Community Structure and Functional Potential”. Environmental Microbiome 20 (February): 24. doi:10.1186/s40793-025-00681-x.

Roussel Théotime, Hubas Cédric, Halary Sébastien, Chynel Mathias, Duval Charlotte, Cadoret Jean-Paul, Meziane Tarik, et al. 2025. “Limnospira (Cyanobacteria) Chemical Fingerprint Reveals Local Molecular Adaptation”. Microbiology Spectrum, January, e01901–24. doi:10.1128/spectrum.01901-24.

Touceda Inés Seijo, Demay Justine, Duval Charlotte, Yéprémian Claude, Reinhardt Anita, and Marie Benjamin. 2024. “Light and Temperature Culture Conditions Impact the Metabolome of the Cyanobacterium of Therapeutic Interest Planktothricoides Raciborskii PMC 877.14”. Algal Research 84 (December): 103738. doi:10.1016/j.algal.2024.103738.

Colas Simon, Marie Benjamin, Morin Soizic, Milhe-Poutingon Mathieu, Foucault Pierre, Chalvin Siann, Gelber Clémentine, et al. 2024. “New Sensitive Tools to Characterize Meta-Metabolome Response to Short- and Long-Term Cobalt Exposure in Dynamic River Biofilm Communities”. Science of The Total Environment 927 (June): 171851. doi:10.1016/j.scitotenv.2024.171851.

Colas Simon, Marie Benjamin, Milhe-Poutingon Mathieu, Lot Marie-Claire, Boullemant Amiel, Fortin Claude, and Le Faucheur Séverine. 2024. “Meta-Metabolomic Responses of River Biofilms to Cobalt Exposure and Use of Dose-Response Model Trends As an Indicator of Effects”. Journal of Hazardous Materials 470 (May): 134099. doi:10.1016/j.jhazmat.2024.134099.

Halary Sébastien, Duval Charlotte, Marie Benjamin, Bernard Cécile, Piquet Bérénice, Gros Olivier, Bourguet-Kondracki Marie-Lise, and Duperron Sébastien. 2024. “Genomes of Nine Biofilm-Forming Filamentous Strains of Cyanobacteria (genera Jaaginema, Scytonema, and Karukerafilum Gen. Nov.) Isolated from Mangrove Habitats of Guadeloupe (Lesser Antilles)”. FEMS Microbes 5 (January): xtad024. doi:10.1093/femsmc/xtad024.

Duperron Sébastien, Foucault Pierre, Duval Charlotte, Goto Midoli, Gallet Alison, Colas Simon, and Marie Benjamin. 2023. “Multi-Omics Analyses from a Single Sample: Prior Metabolite Extraction Does Not Alter the 16S RRNA-Based Characterization of Prokaryotic Community in a Diversity of Sample Types”. FEMS Microbiology Letters, November, fnad125. doi:10.1093/femsle/fnad125.

Roussel Théotime, Halary Sébastien, Duval Charlotte, Piquet Bérénice, Cadoret Jean-Paul, Vernès Léa, Bernard Cécile, and Marie Benjamin. 2023. “Monospecific Renaming Within the Cyanobacterial Genus Limnospira (Spirulina) and Consequences for Food Authorization”. Journal of Applied Microbiology 134 (August): lxad159. doi:10.1093/jambio/lxad159.

Halary Sébastien, Duperron Sébastien, Kim Tiam Sandra, Duval Charlotte, Bernard Cécile, and Marie Benjamin. 2023. “Intra-Population Genomic Diversity of the Bloom-Forming Cyanobacterium, Aphanizomenon Gracile, at Low Spatial Scale”. ISME Communications 3 (June): 1–4. doi:10.1038/s43705-023-00263-3.

Gallet Alison, Halary Sébastien, Duval Charlotte, Huet Hélène, Duperron Sébastien, and Marie Benjamin. 2023. “Disruption of Fish Gut Microbiota Composition and Holobiont’s Metabolome During a Simulated Microcystis Aeruginosa (Cyanobacteria) Bloom”. Microbiome 11 (May): 108. doi:10.1186/s40168-023-01558-2.

Halary Sébastien, Duperron Sébastien, Demay Justine, Duval Charlotte, Hamlaoui Sahima, Piquet Bérénice, Reinhardt Anita, Bernard Cécile, and Marie Benjamin. 2022. “Metagenome-Based Exploration of Bacterial Communities Associated With Cyanobacteria Strains Isolated from Thermal Muds”. Microorganisms 10 (December): 2337. doi:10.3390/microorganisms10122337.

Gaëtan Juliette, Halary Sébastien, Millet Maxime, Bernard Cécile, Duval Charlotte, Hamlaoui Sahima, Hecquet Amandine, et al. 2022. “Widespread Formation of Intracellular Calcium Carbonates by the Bloom-Forming Cyanobacterium Microcystis”. Environmental Microbiology, December. doi:10.1111/1462-2920.16322.

Duval Charlotte, Marie Benjamin, Foucault Pierre, and Duperron Sébastien. 2022. “Establishment of the Bacterial Microbiota in a Lab-Reared Model Teleost Fish, the Medaka Oryzias Latipes”. Microorganisms 10 (November): 2280. doi:10.3390/microorganisms10112280.