Gallet Alison, Yao Eric Kouamé, Foucault Pierre, Bernard Cécile, Quiblier Catherine, Humbert Jean-François, Coulibaly Julien Kalpy, Troussellier Marc, Marie Benjamin & Duperron Sébastien, 2022 — Fish gut-associated bacterial communities in a tropical lagoon (Aghien lagoon, Ivory Coast). Aghien lagoon (Ivory Coast) is a eutrophic freshwater lagoon that harbors high biomasses of phytoplankton. Despite Increasing… Frontiers in Microbiology vol. 13, ,
ISSN
1664-302X
https://www.frontiersin.org/articles/10.3389/fmicb.2022.963456
Foucault Pierre, Gallet Alison, Duval Charlotte, Marie Benjamin & Duperron Sébastien, October 2022 — Gut microbiota and holobiont metabolome composition of the Medaka fish (Oryzias latipes) are affected by a short exposure to the cyanobacterium Microcystis aeruginosa. Blooms of toxic cyanobacteria are a common stress encountered by aquatic fauna. Evidence indicates that long-lasting blooms… Aquatic Toxicology , , p. 106329
ISSN
0166-445X
https://dx.doi.org/10.1016/j.aquatox.2022.106329
Duval Charlotte, Marie Benjamin, Foucault Pierre & Duperron Sébastien, November 2022 — Establishment of the Bacterial Microbiota in a Lab-Reared Model Teleost Fish, the Medaka Oryzias latipes. Oryzias latipes is an important model organism for physiology, genetics, and developmental studies, and has also emerged as a… Microorganisms vol. 10, n° 11, p. 2280 Number: 11 Publisher: Multidisciplinary Digital Publishing Institute
ISSN
2076-2607
https://dx.doi.org/10.3390/microorganisms10112280
Duperron Sébastien, Foucault Pierre, Duval Charlotte, Goto Midoli, Gallet Alison, Colas Simon & Marie Benjamin, November 2023 — Multi-omics analyses from a single sample: prior metabolite extraction does not alter the 16S rRNA-based characterization of prokaryotic community in a diversity of sample types. Massive sequencing of the 16S rRNA gene has become a standard first step to describe and compare microbial communities from… FEMS Microbiology Letters , , fnad125
ISSN
0378-1097
https://dx.doi.org/10.1093/femsle/fnad125
Colas Simon, Marie Benjamin, Morin Soizic, Milhe-Poutingon Mathieu, Foucault Pierre, Chalvin Siann, Gelber Clémentine, Baldoni-Andrey Patrick, Gurieff Nicholas, Fortin Claude & Le Faucheur Séverine, June 2024 — New sensitive tools to characterize meta-metabolome response to short- and long-term cobalt exposure in dynamic river biofilm communities. Untargeted metabolomics is a non-a priori analysis of biomolecules that characterizes the metabolome variations induced by… Science of The Total Environment vol. 927, , p. 171851
ISSN
0048-9697
https://dx.doi.org/10.1016/j.scitotenv.2024.171851
Foucault Pierre, Halary Sébastien, Duval Charlotte, Goto Midoli, Marie Benjamin, Hamlaoui Sahima, Jardillier Ludwig, Lamy Dominique, Lance Emilie, Raimbault Emmanuelle, Allouti Fayçal, Troussellier Marc, Bernard Cécile, Leloup Julie & Duperron Sébastien, February 2025 — A summer in the greater Paris: trophic status of peri-urban lakes shapes prokaryotic community structure and functional potential. With more than 12 million inhabitants, the Greater Paris offers a “natural laboratory” to explore the effects of eutrophication… Environmental Microbiome vol. 20, n° 1, p. 24
ISSN
2524-6372
https://dx.doi.org/10.1186/s40793-025-00681-x
Miebach Jeanne, Green David, Strittmatter Martina, Mallinger Claire, Le Garrec Lucie, Zhang Qian Yi, Foucault Pierre, Kunz Caroline & Gachon Claire M. M., January 2025 — Importance, structure, cultivability, and resilience of the bacterial microbiota during infection of laboratory-grown Haematococcus spp. by the blastocladialean pathogen Paraphysoderma sedebokerense: evidence for a domesticated microbiota and its potentia. FEMS Microbiology Ecology vol. 101, n° 2,
ISSN
0168-6496
https://dx.doi.org/10.1093/femsec/fiaf011